MRIQC: individual T1w report

Summary

Subject ID: 019_ExercisePre.
Date and time: 2018-05-06, 23:41.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.3349237136979798
cnr			3.80330620303583
efc			0.6092073090201912
fber			62.415802001953125
fwhm	avg		4.0116233333333335
fwhm	x		3.90294
fwhm	y		4.14316
fwhm	z		3.98877
icvs	csf		0.222110804101084
icvs	gm		0.44012466691654933
icvs	wm		0.33776452898236664
inu	med		1.2773739099502563
inu	range		0.36435792446136483
qi	1		0.0
qi	2		0.000671408356266929
rpve	csf		24.35228131696052
rpve	gm		12.905867704280155
rpve	wm		19.40578542937491
size	x		180
size	y		256
size	z		256
snr	csf		2.428279951674083
snr	gm		10.131253251196553
snr	total		8.89982801895934
snr	wm		14.139950854007385
snrd	csf		10.438644909723559
snrd	gm		23.419817670455082
snrd	total		23.609415728456565
snrd	wm		36.969784605191045
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.794461262483468
summary	bg	mad	17.72134780883789
summary	bg	mean	66.57316589355469
summary	bg	median	64.48492431640625
summary	bg	n	3088568.0
summary	bg	p05	39.75108413696289
summary	bg	p95	100.81667137145995
summary	bg	stdv	19.38036346435547
summary	csf	k	-0.19805453114443283
summary	csf	mad	125.87403106689453
summary	csf	mean	289.63726806640625
summary	csf	median	282.3638916015625
summary	csf	n	15552.0
summary	csf	p05	113.08110694885255
summary	csf	p95	486.949087524414
summary	csf	stdv	116.27770233154297
summary	gm	k	0.1387881745314825
summary	gm	mad	61.032920837402344
summary	gm	mean	632.572021484375
summary	gm	median	633.5028076171875
summary	gm	n	25456.0
summary	gm	p05	528.8382415771484
summary	gm	p95	733.6737976074219
summary	gm	stdv	62.5283317565918
summary	wm	k	1.8851792857341216
summary	wm	mad	61.72489929199219
summary	wm	mean	1002.9365234375
summary	wm	median	1000.0275268554688
summary	wm	n	170416.0
summary	wm	p05	892.2814025878906
summary	wm	p95	1121.0283203125
summary	wm	stdv	70.72334289550781
tpm	overlap	csf	0.21613501012325287
tpm	overlap	gm	0.5216102600097656
tpm	overlap	wm	0.5647225975990295
wm2max			0.6497572389052793

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	4662d70c8a3de64014421490a144d7a4
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.