MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.3349237136979798
cnr3.80330620303583
efc0.6092073090201912
fber62.415802001953125
fwhmavg4.0116233333333335
fwhmx3.90294
fwhmy4.14316
fwhmz3.98877
icvscsf0.222110804101084
icvsgm0.44012466691654933
icvswm0.33776452898236664
inumed1.2773739099502563
inurange0.36435792446136483
qi10.0
qi20.000671408356266929
rpvecsf24.35228131696052
rpvegm12.905867704280155
rpvewm19.40578542937491
sizex180
sizey256
sizez256
snrcsf2.428279951674083
snrgm10.131253251196553
snrtotal8.89982801895934
snrwm14.139950854007385
snrdcsf10.438644909723559
snrdgm23.419817670455082
snrdtotal23.609415728456565
snrdwm36.969784605191045
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.794461262483468
summarybgmad17.72134780883789
summarybgmean66.57316589355469
summarybgmedian64.48492431640625
summarybgn3088568.0
summarybgp0539.75108413696289
summarybgp95100.81667137145995
summarybgstdv19.38036346435547
summarycsfk-0.19805453114443283
summarycsfmad125.87403106689453
summarycsfmean289.63726806640625
summarycsfmedian282.3638916015625
summarycsfn15552.0
summarycsfp05113.08110694885255
summarycsfp95486.949087524414
summarycsfstdv116.27770233154297
summarygmk0.1387881745314825
summarygmmad61.032920837402344
summarygmmean632.572021484375
summarygmmedian633.5028076171875
summarygmn25456.0
summarygmp05528.8382415771484
summarygmp95733.6737976074219
summarygmstdv62.5283317565918
summarywmk1.8851792857341216
summarywmmad61.72489929199219
summarywmmean1002.9365234375
summarywmmedian1000.0275268554688
summarywmn170416.0
summarywmp05892.2814025878906
summarywmp951121.0283203125
summarywmstdv70.72334289550781
tpmoverlapcsf0.21613501012325287
tpmoverlapgm0.5216102600097656
tpmoverlapwm0.5647225975990295
wm2max0.6497572389052793

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum4662d70c8a3de64014421490a144d7a4
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.